{ "_id": "6a1f224fb401979e7342084e", "Package": "metagear", "Version": "0.7", "Date": "2021-02-15", "Title": "Comprehensive Research Synthesis Tools for Systematic Reviews\nand Meta-Analysis", "Authors@R": "person(given = \"Marc J.\", family = \"Lajeunesse\", role = c(\"aut\",\"cre\"), \nemail = \"lajeunesse@usf.edu\", comment = c(ORCID = \"0000-0002-9678-2080\"))", "Description": "Functionalities for facilitating systematic reviews, data\nextractions, and meta-analyses. It includes a GUI (graphical\nuser interface) to help screen the abstracts and titles of\nbibliographic data; tools to assign screening effort across\nmultiple collaborators/reviewers and to assess inter- reviewer\nreliability; tools to help automate the download and retrieval\nof journal PDF articles from online databases; figure and image\nextractions from PDFs; web scraping of citations; automated and\nmanual data extraction from scatter-plot and bar-plot images;\nPRISMA (Preferred Reporting Items for Systematic Reviews and\nMeta-Analyses) flow diagrams; simple imputation tools to fill\ngaps in incomplete or missing study parameters; generation of\nrandom effects sizes for Hedges' d, log response ratio, odds\nratio, and correlation coefficients for Monte Carlo\nexperiments; covariance equations for modelling dependencies\namong multiple effect sizes (e.g., effect sizes with a common\ncontrol); and finally summaries that replicate analyses and\noutputs from widely used but no longer updated meta-analysis\nsoftware (i.e., metawin). Funding for this package was\nsupported by National Science Foundation (NSF) grants\nDBI-1262545 and DEB-1451031. CITE: Lajeunesse, M.J. (2016)\nFacilitating systematic reviews, data extraction and\nmeta-analysis with the metagear package for R. Methods in\nEcology and Evolution 7, 323-330 .", "Type": "Package", "biocViews": "", "SystemRequirements": "Tcl/Tk toolkit (X11 Quarts for Mac)", "VignetteBuilder": "R.rsp", "License": "GPL (>= 2)", "URL": "http://lajeunesse.myweb.usf.edu/ https://github.com/mjlajeunesse/\nhttps://www.youtube.com/c/LajeunesseLab/", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.1.1", "Config/pak/sysreqs": "libicu-dev tcl tk tk-dev libx11-dev", "Repository": "https://mjlajeunesse.r-universe.dev", "Date/Publication": "2021-05-05 13:58:24 UTC", "RemoteUrl": "https://github.com/mjlajeunesse/metagear", "RemoteRef": "HEAD", "RemoteSha": "37354985d3e48c8e574bf7b1592bdb8122d8cc6d", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-16 07:19:30 UTC", "User": "root" }, "Author": "Marc J. Lajeunesse [aut, cre] (ORCID:\n)", "Maintainer": "Marc J. Lajeunesse ", "MD5sum": "ed7803b44965d2a7c0fdffd829024c9d", "_user": "mjlajeunesse", "_type": "src", "_file": "metagear_0.7.tar.gz", "_fileid": "4553b32500fe9dacb30cd48df222bfd10a19aa4593969a87ccba63dd3edc4691", "_filesize": 1025481, "_sha256": "4553b32500fe9dacb30cd48df222bfd10a19aa4593969a87ccba63dd3edc4691", "_created": "2026-05-16T07:19:30.000Z", "_published": "2026-06-02T18:34:55.885Z", "_distro": "noble", "_jobs": [ { "job": 79144556802, "time": 186, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7031545996" }, { "job": 79144557155, "time": 174, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7031544732" }, { "job": 79144557476, "time": 105, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7031537302" }, { "job": 79144556955, "time": 124, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7031539386" }, { "job": 79144556086, "time": 177, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7031526290" }, { "job": 79144556048, "time": 126, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7366600150" }, { "job": 79144557095, "time": 111, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7031537858" }, { "job": 79144557506, "time": 113, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7031538335" }, { "job": 79144557265, "time": 120, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7031538874" } ], "_buildurl": "https://github.com/r-universe/mjlajeunesse/actions/runs/25955934944", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/mjlajeunesse/metagear", "_commit": { "id": "37354985d3e48c8e574bf7b1592bdb8122d8cc6d", "author": "Marc J. Lajeunesse ", "committer": "Marc J. Lajeunesse ", "message": "logo\n", "time": 1620223104 }, "_maintainer": { "name": "Marc J. 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Prof. in Research Synthesis, Ecology, and Evolutionary Biology at the University of South Florida" }, "_downloads": { "count": 1219, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/metagear" }, "_mentions": 8, "_devurl": "https://github.com/mjlajeunesse/metagear", "_searchresults": 119, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/metagear.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/mjlajeunesse/metagear", "_realowner": "mjlajeunesse", "_cranurl": true, "_releases": [ { "version": "0.1", "date": "2015-05-21" }, { "version": "0.2", "date": "2015-08-19" }, { "version": "0.3", "date": "2017-01-03" }, { "version": "0.4", "date": "2017-03-24" }, { "version": "0.5", "date": "2020-03-20" }, { "version": "0.6", "date": "2020-04-11" }, { "version": "0.7", "date": "2021-02-15" } ], 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"fields": [ "AUTHORS", "YEAR", "TITLE", "JOURNAL", "VOLUME", "LPAGES", "UPAGES", "DOI", "ABSTRACT" ], "rows": 11, "table": true, "tojson": true } ], "_help": [ { "page": "metagear-package", "title": "Research synthesis tools to facilitate systematic reviews, data extraction, and meta-analysis.", "topics": [ "metagear-package" ] }, { "page": "abstract_screener", "title": "A GUI screener to quickly code candidate studies for inclusion/exclusion into a systematic review or meta-analysis.", "topics": [ "abstract_screener" ] }, { "page": "browse_DOI", "title": "Opens a web page associated with a DOI (digital object identifier).", "topics": [ "browse_DOI" ] }, { "page": "chachi", "title": "A small tribute to Chachi.", "topics": [ "chachi" ] }, { "page": "covariance_commonControl", "title": "Generates a sampling variance-covariance matrix for modeling dependencies among effect sizes due to sharing a common control.", "topics": [ "covariance_commonControl" ] }, { "page": "effort_distribute", "title": "Assigns title/abstract screening efforts to a team.", "topics": [ "effort_distribute" ] }, { "page": "effort_initialize", "title": "Formats a reference dataset for title/abstract screening efforts.", "topics": [ "effort_initialize" ] }, { "page": "effort_merge", "title": "Merges multiple files that had title/abstract screening efforts distributed across a team.", "topics": [ "effort_merge" ] }, { "page": "effort_redistribute", "title": "Redistributes title/abstract screening efforts among a review team.", "topics": [ "effort_redistribute" ] }, { "page": "effort_summary", "title": "Provides a text summary of screening efforts among the reviewing team.", "topics": [ "effort_summary" ] }, { "page": "example_references_metagear", "title": "A collection of bibliographic references", "topics": [ "example_references_metagear" ] }, { "page": "figure_add", "title": "Manually add/detect points to a scatter plot figure.", "topics": [ "figure_add" ] }, { "page": "figure_barPlot", "title": "Detect and display all bar plot objects.", "topics": [ "figure_barPlot" ] }, { "page": "figure_detectAllPoints", "title": "Automated detection of plotted points from a scatter-plot figure image.", "topics": [ "figure_detectAllPoints" ] }, { "page": "figure_detectAxis", "title": "Detect an axis from a figure image.", "topics": [ "figure_detectAxis" ] }, { "page": "figure_display", "title": "Displays an image plot.", "topics": [ "figure_display" ] }, { "page": "figure_displayDetectedPoints", "title": "Displays detected points on figure.", "topics": [ "figure_displayDetectedPoints" ] }, { "page": "figure_displayDetections", "title": "Displays the detected figure objects.", "topics": [ "figure_displayDetections" ] }, { "page": "figure_extractDetectedPoints", "title": "Extracts data points from a detected image.", "topics": [ "figure_extractDetectedPoints" ] }, { "page": "figure_read", "title": "Reads/loads a figure image from file.", "topics": [ "figure_read" ] }, { "page": "figure_removeOutlyingPoints", "title": "Remove outlier points from a figure.", "topics": [ "figure_removeOutlyingPoints" ] }, { "page": "figure_scatterPlot", "title": "Detect and display all scatter plot objects.", "topics": [ "figure_scatterPlot" ] }, { "page": "figure_splitPlot", "title": "Splits a composite figure that contains multiple plots.", "topics": [ "figure_splitPlot" ] }, { "page": "figure_transformByColors", "title": "Transforms RBG figure into list of binary images.", "topics": [ "figure_transformByColors" ] }, { "page": "figure_transformToBinary", "title": "Transforms figure to binary image.", "topics": [ "figure_transformToBinary" ] }, { "page": "figure_write", "title": "Saves/writes a figure image.", "topics": [ "figure_write" ] }, { "page": "impute_missingness", "title": "Provides a summary of missingness in a dataset.", "topics": [ "impute_missingness" ] }, { "page": "impute_SD", "title": "Imputes missing standard deviations in a dataset.", "topics": [ "impute_SD" ] }, { "page": "isPDF", "title": "Evaluates whether a file is a PDF document.", "topics": [ "isPDF" ] }, { "page": "Kam_et_al_2003_Fig2.jpg", "title": "An example image of a scatterplot figure", "topics": [ "Kam_et_al_2003_Fig2.jpg" ] }, { "page": "Kortum_and_Acymyan_2013_Fig4.jpg", "title": "An example image of a bar plot figure", "topics": [ "Kortum_and_Acymyan_2013_Fig4.jpg" ] }, { "page": "MA_effectsTable", "title": "Generate an ANOVA-like effects table for a meta-analysis.", "topics": [ "MA_effectsTable" ] }, { "page": "PDF_download", "title": "Attempts to download a PDF using a DOI link.", "topics": [ "PDF_download" ] }, { "page": "PDF_extractImages", "title": "Attempts to extract all images from a PDF", "topics": [ "PDF_extractImages" ] }, { "page": "PDFs_collect", "title": "Attempts to download PDFs from multiple DOI links.", "topics": [ "PDFs_collect" ] }, { "page": "plot_PRISMA", "title": "Plots and creates a PRISMA flow diagram.", "topics": [ "plot_PRISMA" ] }, { "page": 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